PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G29420.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 186aa    MW: 20518.9 Da    PI: 6.9041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G29420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-065678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+Cp C+++F++    + H+r+H
  OGLUM06G29420.1 56 YPCPLCDRHFPTEKAVHGHMRSH 78
                     99********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MAGQVFVHHL GGGSGGDDPT HPWLSLKSSH EMDDAVASWR EKLADMAAAD ERAGRYPCPL  60
CDRHFPTEKA VHGHMRSHPG RGWRGMEPPR EPSPGDLALA ADGKRYRYVC DRCKAPFETR  120
QALGGHRASH STKKGCSWHA KQLAMEMATK PPKNDFDLND LSLEAIQAAQ EEQAAQEGNK  180
DEEPKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-15C2H2 family protein