PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G29530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 447aa MW: 49138.3 Da PI: 5.0564

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G29530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ OGLUM06G29530.1 61 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105 789***************55.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MPQLEEKDSS DLAINKGPSL DLVKSPLMMN DASATVTAMQ PEGMEEFPVK VRKPYTITKQ 60 REKWTEEEHD KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGSNNAIE 120 IPPPRPKRKP LHPYPRKCAN SGSDANPATA QLKLAPGSSS SGSDQENGSP ISVLSAMQSD 180 AFGSSVSNPS TRCTSPASSD DGNNIPTFTS GEDNNVPCEP TVIYPSQSHK EIDQDRKDVN 240 NMSEEDSSEE EVQETSLKLF GRTVVIPDPR KRSSSDPKHE SEEQISQPSY EEMLQASSSV 300 GEIPAAYCAP NGWFMSYNSF PFQFGESAAD ARIPPLHVWW PYYGFAPISH PRGLSTVMQQ 360 TEGSDESDGG KSHSSESSSD SGENVQMTAP QSSRIVESLG AIYVRDSGSS FELKPSANSA 420 FVRVKPSNSG DEEVIRGFVP YKRCKFQ

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MPQLEEKDSS DLAINKGPSL DLVKSPLMMN DASATVTAMQ PEGMEEFPVK VRKPYTITKQ  60
REKWTEEEHD KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGSNNAIE  120
IPPPRPKRKP LHPYPRKCAN SGSDANPATA QLKLAPGSSS SGSDQENGSP ISVLSAMQSD  180
AFGSSVSNPS TRCTSPASSD DGNNIPTFTS GEDNNVPCEP TVIYPSQSHK EIDQDRKDVN  240
NMSEEDSSEE EVQETSLKLF GRTVVIPDPR KRSSSDPKHE SEEQISQPSY EEMLQASSSV  300
GEIPAAYCAP NGWFMSYNSF PFQFGESAAD ARIPPLHVWW PYYGFAPISH PRGLSTVMQQ  360
TEGSDESDGG KSHSSESSSD SGENVQMTAP QSSRIVESLG AIYVRDSGSS FELKPSANSA  420
FVRVKPSNSG DEEVIRGFVP YKRCKFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	5e-38	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G29530.1