PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G01370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 414aa    MW: 44426.1 Da    PI: 7.8139
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G01370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY38.63.8e-121912222455
            YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasq 55 
                      vsvPs+slfk+vtvrCGhC+sll+vn+     
  OGLUM07G01370.1 191 VSVPSSSLFKTVTVRCGHCSSLLTVNIGGLLL 222
                      9*************************987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLPF PPASATSVFA CHCRMVDPTS  60
RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV  120
LLFSPPPPAV AAATLLLFLS SDAAAAAGTY TQNVGLLEET FGLTEDAVNE SEAEATSSEQ  180
RMETLVSEAK VSVPSSSLFK TVTVRCGHCS SLLTVNIGGL LLLPTSATAP PPPPPPPPPA  240
ATHFPHSLNL APPANPPHHH SLLDEISTAC SPTQLLLEQH GLGGLMASAA SCRNNNVCRN  300
NKKMIAFLRW ALHPPSFFRA RDSKKLVAFI SGVPARIRAR DDVVRMAVIN FPCVHKKLRS  360
KREERREEGR EEGKKNMTWH HNMWDPRGFY ANSTVTWDKT GVNTTLGSRV TGFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.22e-08YABBY family protein