PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G02780.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 228aa    MW: 23897.6 Da    PI: 8.2212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G02780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00147294123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C ++F+ +  L  H++ H
  OGLUM07G02780.1 72 FPCLFCERTFRKSQALGGHQNAH 94
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MESSRRHGGG ARLFPCLFCD RTFLKSQALG GHQNAHRKDR VACGGSCNPY LYGGGGHDPY  60
YAWGGGGGAR LFPCLFCERT FRKSQALGGH QNAHRKDRVA AGRNPYVYYA AGAPSFSSAA  120
GSEVVTAGLA AAAWSIPISS HGCSDVGPIE RRSGVGVGIG AGGRRLTEHA QLMAAVGGAG  180
RDENTVDMLN WTRASHAAAA ADDDDSSMGA GDEQMDLELR LSRSSCLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-11C2H2 family protein