PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G03110.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 213aa MW: 23658.7 Da PI: 10.4712

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G03110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	110.2	3.9e-34	1	103	1	111
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 ++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h ++++++++++n+ s+++++++++t OGLUM07G03110.1 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH--------QVQNRGFQGNNFGSYDIASRNQRT 86 57999******************************************************9........99****************** PP YABBY 95 svsseklsenedeevpr 111 s++++ +++++++ + + OGLUM07G03110.1 87 STAMYPMPTSQQQPLRK 103 ******999987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60 DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQP LRKDSVSRLH TTDLSRRRYR 120 GLKPAILRLA TGRHSVLLQR TGLIFPGSIS ASASPTAAAA ATNRGGAACR PATDRRHPRR 180 RAAATGRECA RRRDDDDDDD ILLSRVPLSS PRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-16	YABBY family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G03110.1