PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G04350.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 782aa MW: 84432.1 Da PI: 6.4982

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G04350.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.2	5e-16	459	497	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk OGLUM07G04350.1 459 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 497 589**********************************96 PP
2	TCR	50.9	3.1e-16	545	584	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ OGLUM07G04350.1 545 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 584 589***********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MDTPDLQDSP LFSFINSLSP IEPLKSAYSA SSIQAYQSLN ITSISSIFTS PHDNAQKESK 60 LSKSSFAEFS ESEVCADESD KNKPSKSSNA VRLFACTSTL TQATHKITSS VSEGTVGPPE 120 GSNDLPQPGQ FDSGSPDHNT TPCHGVRSDL KQGKCRKLQA FQTAKTNTSE KRKCLFSTEV 180 QLMDGCQPEK LNDEILGCDW DDLISATSGE LIAYDEDHKG VQLAVSNAES CGFLLSKLTG 240 DGDISDRTHP SSSTQTYYRE LLMDEDQTEN AQLVPDGEKN ISTEEIQDNL YEANGSIPTG 300 YKVETQQQRG MRRRCLVFEA AGYSNRIVQK ESVMDLSVST CKGKSPVQNH SNPGKTPSPR 360 VLRGIGLHLN ALALTSKDKM ICQDPMSSLV PSSATQQEAH GKMLSAGENF IHPGGELLEL 420 QMDDDCSAGV FLGNDHDSSQ SNSPQKKRRK SDNGDDGEAC KRCSCKKSKC LKLYCECFAA 480 GVYCSEPCSC QGCLNKPIHE EIVLSTRKQI EFRNPLAFAP KVIRMSDAGQ DITGEDPNNT 540 PASARHKRGC NCKKSSCLKK YCECYQGGVG CSSNCRCEGC KNTFGKRDAA VSTEAEEMKQ 600 GGEEAENCGK EKENDLQKAN AQSEDHPFLE LVPITPPFDV SSSLLKPPNF SSAKPPRPTK 660 ARSNSSRSSS KAPGAVHSQK FSKIANSGLN EEMPDILRDD ASPGNCVKTS SPNGKRVSPP 720 HNALSVSPSR KGGRKLILKS IPSFPSLIGD ASSGSSMNSS ESAFNAASPL ALDVRLYTSL 780 LT

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MDTPDLQDSP LFSFINSLSP IEPLKSAYSA SSIQAYQSLN ITSISSIFTS PHDNAQKESK  60
LSKSSFAEFS ESEVCADESD KNKPSKSSNA VRLFACTSTL TQATHKITSS VSEGTVGPPE  120
GSNDLPQPGQ FDSGSPDHNT TPCHGVRSDL KQGKCRKLQA FQTAKTNTSE KRKCLFSTEV  180
QLMDGCQPEK LNDEILGCDW DDLISATSGE LIAYDEDHKG VQLAVSNAES CGFLLSKLTG  240
DGDISDRTHP SSSTQTYYRE LLMDEDQTEN AQLVPDGEKN ISTEEIQDNL YEANGSIPTG  300
YKVETQQQRG MRRRCLVFEA AGYSNRIVQK ESVMDLSVST CKGKSPVQNH SNPGKTPSPR  360
VLRGIGLHLN ALALTSKDKM ICQDPMSSLV PSSATQQEAH GKMLSAGENF IHPGGELLEL  420
QMDDDCSAGV FLGNDHDSSQ SNSPQKKRRK SDNGDDGEAC KRCSCKKSKC LKLYCECFAA  480
GVYCSEPCSC QGCLNKPIHE EIVLSTRKQI EFRNPLAFAP KVIRMSDAGQ DITGEDPNNT  540
PASARHKRGC NCKKSSCLKK YCECYQGGVG CSSNCRCEGC KNTFGKRDAA VSTEAEEMKQ  600
GGEEAENCGK EKENDLQKAN AQSEDHPFLE LVPITPPFDV SSSLLKPPNF SSAKPPRPTK  660
ARSNSSRSSS KAPGAVHSQK FSKIANSGLN EEMPDILRDD ASPGNCVKTS SPNGKRVSPP  720
HNALSVSPSR KGGRKLILKS IPSFPSLIGD ASSGSSMNSS ESAFNAASPL ALDVRLYTSL  780
LT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	446	450	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	5e-84	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G04350.1