PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G04790.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 293aa    MW: 31051.2 Da    PI: 7.0897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G04790.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08143187554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  OGLUM07G04790.1 143 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 187
                      99***********************7.....5***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MAGQQPPTGG AEDDFFDHFF SIPSAAAAGA GGVGGLGSGD HHPFPLALSL DAEGAGAARR  60
LLDGGHDGGR TDRDPVQLAG LFAPVFGAAA GVQPPHLRAP PPPQVFHAQP KPGEGAMAAP  120
QPQQPPAPRP KVRARRGQAT DPHSIAERLR RERIAERMRA LQDLVPNTNK TDRAAMLDEI  180
LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPISVKGEA SHSGSKQQIW EKWSTDGTEK  240
QVAKLMEEDI GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGHSVKPEPN TPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-55bHLH family protein