PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G05680.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 254aa    MW: 27491.4 Da    PI: 8.4929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G05680.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11136183455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  OGLUM07G05680.1 136 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 183
                      8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MDPVPSLAAE LWRPHHHRHH LEASSVVTDQ GSGSRGGGGS GRRRPRRDAG PEDDDSSKVV  60
STSAASGGGG GQDSVAPEAK RLKPMKSSDK NDSLRTEAGT DSGNSSKAAD KNATPPEPPK  120
QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAS VLDEIINYIQ  180
SLQHQVEFLS MKLEAVNSHM NNGIVAFPSK DFGAQPYNTA AGLTFDPQTT REFAQGSTSE  240
WLHMQIGNAY ERVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-69bHLH family protein