PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G07150.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 462aa MW: 49712.5 Da PI: 5.8987

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G07150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.3e-16	108	154	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l OGLUM07G07150.1 108 KGGWTREEDEVLRQMVRHHGDRKWAEIAKSLP-GRVGKQCRERWTNHL 154 688***************************.**********996 PP
2	Myb_DNA-binding	54.1	3.5e-17	162	202	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a++ +G+ W++Ia++++ gR+++ +k++w+ OGLUM07G07150.1 162 IWTEEEDRILIEAHQTYGNS-WSAIAKRLP-GRSENTIKNHWN 202 6***************99.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MAAAGNSFLN QELVKAADGV SDWHLPSSSH GGTCHTNTRA APITVGVPDL GCPVSSIGVA 60 TSSSLTPKEG LATASYNSVV AFPVGATMVP QQQQTQAAGS NDNPGLVKGG WTREEDEVLR 120 QMVRHHGDRK WAEIAKSLPG RVGKQCRERW TNHLHPDIKK DIWTEEEDRI LIEAHQTYGN 180 SWSAIAKRLP GRSENTIKNH WNATKRSLNS KRRLRKKNSE QTVPGQPSLL ENYIRSCQHM 240 LPSEIAPPPP APPAPFDISR YGNSGVIGAS PTLPVVQEPG TSTPPGLVMF LDLLNQAIPH 300 PPQPETMDLF NMTPEVSHLN TSGYCLQLDA GGNLSYGQLP APALVQPHGI STQELQDTPH 360 LSLYYPLSSF AGSHTDGTVE FDHQLSNPDG GHYGEEAGPS SVAAGGSANG MDDNDVVQMA 420 SNQFMMPSED EGELMMAAGN SFLNQELLMV VNIMRSHGGA SY

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MAAAGNSFLN QELVKAADGV SDWHLPSSSH GGTCHTNTRA APITVGVPDL GCPVSSIGVA  60
TSSSLTPKEG LATASYNSVV AFPVGATMVP QQQQTQAAGS NDNPGLVKGG WTREEDEVLR  120
QMVRHHGDRK WAEIAKSLPG RVGKQCRERW TNHLHPDIKK DIWTEEEDRI LIEAHQTYGN  180
SWSAIAKRLP GRSENTIKNH WNATKRSLNS KRRLRKKNSE QTVPGQPSLL ENYIRSCQHM  240
LPSEIAPPPP APPAPFDISR YGNSGVIGAS PTLPVVQEPG TSTPPGLVMF LDLLNQAIPH  300
PPQPETMDLF NMTPEVSHLN TSGYCLQLDA GGNLSYGQLP APALVQPHGI STQELQDTPH  360
LSLYYPLSSF AGSHTDGTVE FDHQLSNPDG GHYGEEAGPS SVAAGGSANG MDDNDVVQMA  420
SNQFMMPSED EGELMMAAGN SFLNQELLMV VNIMRSHGGA SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	7e-48	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G07150.1