PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G07870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 365aa MW: 40316.5 Da PI: 10.1696

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G07870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.6e-17	94	140	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l OGLUM07G07870.1 94 KGGWTREEDEVLRQMVRHHGDRKWAEIAKSLP-GRIGKQCRERWTNHL 140 688***************************.**********996 PP
2	Myb_DNA-binding	46.9	6.2e-15	156	196	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a++ +G++ W++Iar ++ g +++ +k+rw+ OGLUM07G07870.1 156 IWTEEEDRKLIRAHQTYGNR-WSAIARSLP-GWSENTVKNRWN 196 5*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MATDRMPDSH FMASSNGGAC YQNTRGTPIT MGVPNLGCLV ASIGMAPSSS LMPERGLATA 60 NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWTRE EDEVLRQMVR HHGDRKWAEI 120 AKSLPGRIGK QCRERWTNHL HRTLRYGSCD IPLNGIWTEE EDRKLIRAHQ TYGNRWSAIA 180 RSLPGWSENT VKNRWNATKR SLNSKCRLRK KNSEQVVPRQ PSLLKEYIHS CQHPLPNETA 240 PPASFDIGGY GTGGTIGASP TLPTVHVLGG STPLGLVMFL DLLNQATPHP PQPDLNLLNI 300 TPVVPHLNTS GYCQLDARGN CSGATVVWPA AGATPRDQRP GRPKQRRHQW QNRRHGQQWR 360 HPDGV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MATDRMPDSH FMASSNGGAC YQNTRGTPIT MGVPNLGCLV ASIGMAPSSS LMPERGLATA  60
NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWTRE EDEVLRQMVR HHGDRKWAEI  120
AKSLPGRIGK QCRERWTNHL HRTLRYGSCD IPLNGIWTEE EDRKLIRAHQ TYGNRWSAIA  180
RSLPGWSENT VKNRWNATKR SLNSKCRLRK KNSEQVVPRQ PSLLKEYIHS CQHPLPNETA  240
PPASFDIGGY GTGGTIGASP TLPTVHVLGG STPLGLVMFL DLLNQATPHP PQPDLNLLNI  300
TPVVPHLNTS GYCQLDARGN CSGATVVWPA AGATPRDQRP GRPKQRRHQW QNRRHGQQWR  360
HPDGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	349	GRPKQRRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-39	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G07870.1