PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G08970.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 1250aa MW: 141272 Da PI: 5.9296

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G08970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.4e-18	72	158	1	88
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kv tpsdv+++grlv+p ++ae + +++e++ l++ed g+ W++ + r++s lt GW++F + n+L++gD+v F++ ++ OGLUM07G08970.1 72 FDKVVTPSDVGNLGRLVIPWQHAECYfprdvPANEREGVVLRFEDDAGKPWRFLY--RGSS----LTLGWSHFFRKNRLDAGDMVSFYRGASE 158 89*******************88899778899***************..9999....*********************65433 PP

Sequence ? help Back to Top
Protein Sequence Length: 1250 aa Download sequence
MEPGSSSREG EQQEPANERL IATGGGGGGG SPVSDQELSD GEEVSDGEYQ AGDDFSGYAV 60 RGRGFVEKEH MFDKVVTPSD VGNLGRLVIP WQHAECYFPR DVPANEREGV VLRFEDDAGK 120 PWRFLYRGSS LTLGWSHFFR KNRLDAGDMV SFYRGASEDT RDRLFIHSKR RMHILPTLGY 180 SDPQVHINRL FQLLVRVRTM VSSFGKSGSP SPPNSPLPTV QNFTYKALKD CLQDLHYYSL 240 LSMMGRNHKT TSHCILLCHG VLGIMGFLCS DENMKEDHRM LQVPAFDDLN YSAQDKITRM 300 KEQTMPSSLA DPIYLLPTAI RNLLYLDLSN CSDIVQLPPS LGSSLHMLSA LNLSCCYSLR 360 ALSDSLVCLY DLQILLLSFC HNLQNLPVSF GDLSNLRLLD LSGCRSLRLF PSSFVNLGSL 420 ENLNLSDCIR LMGIPQNFED LQKLEYLNFA GCYRVDLPVY CLTNLVNLKC LTLSNHTDIK 480 DFPYSFTDLK RHLYLSRWWK YNRVHTQCNL KRLLEKIIEF TTCAYCYDAP SSILEETVRE 540 ELNGKRFLLV LNDADIENQC FWTDVWKVSN VGAAGSALIV TTRSKEVASL FGAMKPYYMN 600 PLSKEECFMV FQEHAGCGFD INNDHELTKV GWKIVEKCGG NLLCMKALSG LLWHSETALS 660 EIDSLVGGIV PALRLCYDLL PSHLKQCFKF CSLFPKDYVF VKHHIIQLWI SQGFVYPEED 720 SQPEDTGLQY FNEFLCRSFF QHCPFSNDHE DKFVMHELFH DLARSVSKDE SFSSEEPFFS 780 LPENICRLSL VISDSNTVVL TKEHRHLQSL MVVRRSATEY SSSFVPLLKI LGLNDLLMKC 840 GFLRALNLSC TTIVDLPGSI GRMKHLRFLA MNNTKIKSLP TEIGQLNTLQ TLELKDCCCL 900 IELPESTKNL MKMRYLDVQK EPGNIHVGMP SGLGQLTDLQ TLTVFNIGDD LSHCSIRDLK 960 NLSGLSGHVH ITGLQNITAG DDAKEANLVG KQFLQALTLE WCCSSEEMED ESDKEIANQV 1020 LQNLQPNTSI QELAIQNYPG NSFPNWIKDS GLCMLVSITI DNSQDCNEIP YLGDLPCLKF 1080 LFIQKMYAVE NFGQRSNSLT TDGKHAPGFP SLEILNLWEM YSLQFWNGTR YGDFPQLRGL 1140 SISRCPKLSN LPPLISLLYL SFHCGDQLPA LSEFPSLKSL KIEGFQKLKS VSFCPEMPML 1200 QKLEISDCKE LVSIDAPLLS VSNLKVVRCP KLHFGGSWLE DCLMWEEFKR

Sequence ? help Back to Top

Protein Sequence Length: 1250 aa Download sequence

MEPGSSSREG EQQEPANERL IATGGGGGGG SPVSDQELSD GEEVSDGEYQ AGDDFSGYAV  60
RGRGFVEKEH MFDKVVTPSD VGNLGRLVIP WQHAECYFPR DVPANEREGV VLRFEDDAGK  120
PWRFLYRGSS LTLGWSHFFR KNRLDAGDMV SFYRGASEDT RDRLFIHSKR RMHILPTLGY  180
SDPQVHINRL FQLLVRVRTM VSSFGKSGSP SPPNSPLPTV QNFTYKALKD CLQDLHYYSL  240
LSMMGRNHKT TSHCILLCHG VLGIMGFLCS DENMKEDHRM LQVPAFDDLN YSAQDKITRM  300
KEQTMPSSLA DPIYLLPTAI RNLLYLDLSN CSDIVQLPPS LGSSLHMLSA LNLSCCYSLR  360
ALSDSLVCLY DLQILLLSFC HNLQNLPVSF GDLSNLRLLD LSGCRSLRLF PSSFVNLGSL  420
ENLNLSDCIR LMGIPQNFED LQKLEYLNFA GCYRVDLPVY CLTNLVNLKC LTLSNHTDIK  480
DFPYSFTDLK RHLYLSRWWK YNRVHTQCNL KRLLEKIIEF TTCAYCYDAP SSILEETVRE  540
ELNGKRFLLV LNDADIENQC FWTDVWKVSN VGAAGSALIV TTRSKEVASL FGAMKPYYMN  600
PLSKEECFMV FQEHAGCGFD INNDHELTKV GWKIVEKCGG NLLCMKALSG LLWHSETALS  660
EIDSLVGGIV PALRLCYDLL PSHLKQCFKF CSLFPKDYVF VKHHIIQLWI SQGFVYPEED  720
SQPEDTGLQY FNEFLCRSFF QHCPFSNDHE DKFVMHELFH DLARSVSKDE SFSSEEPFFS  780
LPENICRLSL VISDSNTVVL TKEHRHLQSL MVVRRSATEY SSSFVPLLKI LGLNDLLMKC  840
GFLRALNLSC TTIVDLPGSI GRMKHLRFLA MNNTKIKSLP TEIGQLNTLQ TLELKDCCCL  900
IELPESTKNL MKMRYLDVQK EPGNIHVGMP SGLGQLTDLQ TLTVFNIGDD LSHCSIRDLK  960
NLSGLSGHVH ITGLQNITAG DDAKEANLVG KQFLQALTLE WCCSSEEMED ESDKEIANQV  1020
LQNLQPNTSI QELAIQNYPG NSFPNWIKDS GLCMLVSITI DNSQDCNEIP YLGDLPCLKF  1080
LFIQKMYAVE NFGQRSNSLT TDGKHAPGFP SLEILNLWEM YSLQFWNGTR YGDFPQLRGL  1140
SISRCPKLSN LPPLISLLYL SFHCGDQLPA LSEFPSLKSL KIEGFQKLKS VSFCPEMPML  1200
QKLEISDCKE LVSIDAPLLS VSNLKVVRCP KLHFGGSWLE DCLMWEEFKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-29	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G08970.1