PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G11160.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 103aa MW: 10776.7 Da PI: 7.7425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G11160.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	17	39	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H OGLUM07G11160.1 17 YECTFCKRGFTNAQALGGHMNIH 39 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence
MDGEGAPARR APAASYYECT FCKRGFTNAQ ALGGHMNIHR KDRSAGGKSQ GGGQHHEGGG 60 SGSGGGGGQQ HGREVHLGLT LGRNEEERDG VDLELRLGHA HYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	53	GGKSQGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	5e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G11160.1