PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G11600.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 231aa MW: 26358.2 Da PI: 5.6468

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G11600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	56	107	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erqVk+WFqNrR+++k OGLUM07G11600.1 56 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 107 579***********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MDNGSQQESS DLHVHHLPIA SVIGVEDHTE EADDAAVDYH DDGSEGQDEV SNKRMKRHTD 60 DQIKHLESVF ERCTYLGGNQ RVELAKKLGM EERQVKFWFQ NRRTRKKMHD ERQEGMWLQE 120 ENDVLHAENK VLKEAIWANI CFTCGSPVVP AIPTVHHRYL SFQNMRLADE LQHATAVFNM 180 VAQDADVGLP PVFPLTDVSP LPQFGFVTGN NQTSLEQHHG KDQQHASNGK W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	3e-31	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G11600.1