PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G11710.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 208aa MW: 24194.8 Da PI: 11.4925

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G11710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	46	90	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l OGLUM07G11710.1 46 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 90 7***************************.*********9886 PP
2	Myb_DNA-binding	24.3	7.3e-08	98	141	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k+rw+ ++ OGLUM07G11710.1 98 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 141 79**************99.****9.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MNIEVVLAPD PEGVIQRSRL EKDQEIGAQP PPPRARCVVR LKLPPAWTPE EDARLQRLAK 60 ENGFRRWSRV ARSMPRRSAR SCRDRWRHHL ARDVYHRPFT ARDDDELLRL HYRLGDRWKE 120 IGRAVYGRTS RVMKHRWREL RRGGFLAAAA RKEQAIDMVE SEVEESADQS LPAPELQPPL 180 SRTLLPRALV IAALPTSTRW IPWPAASR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	3e-18	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G11710.1