PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G12780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 273aa MW: 28433.4 Da PI: 4.4202

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G12780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.8	1.9e-23	184	228	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e OGLUM07G12780.1 184 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 228 69************************************9998875 PP
2	QLQ	54.2	4.3e-19	118	153	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k OGLUM07G12780.1 118 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 153 8*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GGEKVDREGE 60 VEEEEGKEDV EEGGVCKDLV LVEDAVPVED PEEAAATAAL QEEMKALVES VPVGAGAAFT 120 AMQLQELEQQ SRVYQYMAAR VPVPTHLVFP IWKSVTGASS EGAQKYPTLM GLATLCLDFG 180 KNPEPEPGRC RRTDGKKWRC WRNAIANEKY CERHMHRGRK RPVQLVVEDD EPDSTSGSKS 240 ASGKATEGGK KTDDKSSSSK KLAVAAPAAV EST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-29	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G12780.1