PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G12990.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 213aa MW: 22817.3 Da PI: 7.7527

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G12990.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.5	1.1e-13	119	143	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+s++Ca+C tV OGLUM07G12990.2 119 CSGCRNLLMYPAGATSICCAVCGTV 143 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MAVLYVTFLR EVDVGRGLVA LCAHWLKLIV ALLSTSLIYQ EVLSSLAFTG FFRTEIFLAF 60 SSASLESFCR ERKGDFSCLT VAGICEASTS DAIGSGSWHS NAGSPCPISN SWAQSQLVCS 120 GCRNLLMYPA GATSICCAVC GTVTAVPAPE QKSSCNVHEN KERLKGNTNG FRAPQRCARR 180 VDGACTQVAR EVHTEVALVI FTLLCVTLPA SNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	5e-16	LSD family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G12990.2