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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OGLUM07G12990.5 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | LSD | ||||||||
| Protein Properties | Length: 246aa MW: 26386.3 Da PI: 10.4167 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 42.2 | 1.3e-13 | 154 | 178 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP+GA+s++Ca+C tV
OGLUM07G12990.5 154 CSGCRNLLMYPAGATSICCAVCGTV 178
************************9 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 246 aa Download sequence |
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEGLV 60 LRPSSSSPSR SYKIGITPVN EKRVQPTTSP RSRTGVIVDR AILAEDKKHA PRSESPWLKK 120 PMHGVSGSTA MASTPWSSMP PSSHSLGAQS QLVCSGCRNL LMYPAGATSI CCAVCGTVTA 180 VPAPEQKSSC NVHENKERLK GNTNGFRAPQ RCARRVDGAC TQVAREVHTE VALVIFTLLC 240 VTLPDG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G32540.3 | 2e-17 | LSD family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM07G12990.5 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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