PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G13540.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 513aa MW: 58584.6 Da PI: 10.1079

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G13540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	376	423	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+ +++++G g+W++++ g R+ k+c++rw +yl OGLUM07G13540.1 376 KGPWTPEEDLMLASYIQEHGAGNWRAVPTNTGVMRCSKSCRLRWTNYL 423 79********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MSRLILRCYI MGRREYLLLE QLIKQANHRN RSLKFKYPTL HFASPPKFPI PPRRRRRRAI 60 PGPPLPMDAG DASRLGESLD AVSAAFQSRV MELQELVLAR NMYPATAIPD LAAVDVSLTA 120 MEAQLQAVRR RLQEEREAFP KAKKLVQQSL KQQRRLQLML ANMPTGMRED VFATPLEHNS 180 SMMFPESLNF SSAVPEVRDH DLKIKEEPTA PPKKKGRGPA PRWYISTEEL DSLSSYMRGR 240 LTLEKVNIAI NEVASYADGN AHLVACPKKK LSEDTWEKAL ELRDIAARES VKGKHFFLET 300 DIKGPGLKLD TTGKAILTGR HRYPPGYLRC RHQHASLLLP DRDRVDTHTP PTTGRPPRTG 360 EQDGEAAVLR QGWVKKGPWT PEEDLMLASY IQEHGAGNWR AVPTNTGVMR CSKSCRLRWT 420 NYLRPGIKRG NFTEQEEKLI VHLQALLGNR RDHMEVISLM KDGTFIDWDI VDNIWNHAFS 480 FYPEEHPMLI VEPSTNTGQQ REKYLLTLKI MKA

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MSRLILRCYI MGRREYLLLE QLIKQANHRN RSLKFKYPTL HFASPPKFPI PPRRRRRRAI  60
PGPPLPMDAG DASRLGESLD AVSAAFQSRV MELQELVLAR NMYPATAIPD LAAVDVSLTA  120
MEAQLQAVRR RLQEEREAFP KAKKLVQQSL KQQRRLQLML ANMPTGMRED VFATPLEHNS  180
SMMFPESLNF SSAVPEVRDH DLKIKEEPTA PPKKKGRGPA PRWYISTEEL DSLSSYMRGR  240
LTLEKVNIAI NEVASYADGN AHLVACPKKK LSEDTWEKAL ELRDIAARES VKGKHFFLET  300
DIKGPGLKLD TTGKAILTGR HRYPPGYLRC RHQHASLLLP DRDRVDTHTP PTTGRPPRTG  360
EQDGEAAVLR QGWVKKGPWT PEEDLMLASY IQEHGAGNWR AVPTNTGVMR CSKSCRLRWT  420
NYLRPGIKRG NFTEQEEKLI VHLQALLGNR RDHMEVISLM KDGTFIDWDI VDNIWNHAFS  480
FYPEEHPMLI VEPSTNTGQQ REKYLLTLKI MKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	58	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	8e-46	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G13540.1