PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G14530.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 446aa    MW: 49609.1 Da    PI: 4.8861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G14530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.8e-12101136338
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
           SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 
                      ie+++ r+ t+skRr g++K A+ LS L+da va+ 
  OGLUM07G14530.1 101 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 136
                      99*******************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MEREFCEEME SQICQFGTFL EVNNQHSATP KGKTIPVKCT DCLPGVASRS LTVIPLEVPH  60
DVLLSAREAK TQYNSTFEHN LSGTNHYRMV RRGRRKGVRY IEEDRDRSLT LSKRRDGLFK  120
LANDLSLLTD ASVAICLHDN NKAQFFGAPS VKPVVDAFVS EAEPFADEQL KAKLTSMQSE  180
LVQLENEEEE KDKKTEESIQ RFKEAQEESL GMGMTKHLFS RLEDLSHDDM RELLDVLLPL  240
QQDFKKRLPP LRRGSKLQIG GSSAWAHQQP SCSHFLASHR PFTPLLPGGT SGVPMIPPPP  300
VPGSPWSHIF PLRPPLFPSP ELVPSQQLPP VSPPQNTVAP PPMHAPLVQQ PLTNQSSAVP  360
LLTQWQMRFG DQPPAEVQAC TPIEQPQNDN AVHTPTFSDS FLSELLADVS DDGIATAEPL  420
CSPPIDDQFL ADIDWLAELD TIDGNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-08M-type_MADS family protein