PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G14800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 372aa MW: 38125.9 Da PI: 6.7492

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G14800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.3e-16	13	56	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rg W++eEde+lv+++ ++G +W++++++ g+ R++k+c++rw OGLUM07G14800.1 13 RGLWSPEEDEKLVRYISEHGHSCWSSVPKHAGLQRCGKSCRLRW 56 788***************************************** PP
2	Myb_DNA-binding	25.9	2.3e-08	55	77	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia++++ gRt++++k++w++ OGLUM07G14800.1 55 RWAQIAKHLP-GRTDNEVKNFWNS 77 4*******.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWAQIA 60 KHLPGRTDNE VKNFWNSCIK KKLIAQGLDP KTHNLLPASK TLLHGGGGGG AANPSGNGLA 120 QFQSNNGAAA AGTTPFTISS PAKAAAYDVA PPAIPPALYD VVLPANPAGG MLMAHDHHHH 180 HQVAAAAAPV GYPYADHGGN GGGVLMSFRD QNAGVHGAAS MDFMNGSSSS SSMEQLGGGG 240 GMSSNGNGSF SASMAAFMDE EAAMWATAVA PPGMGGLAGM DQVAQQQQQQ QVLVQDAAVG 300 VAPTTLMMHG GGAATAGAMV VDKSVEMVDV SSAVYGGATA TAFDLDLMVE SCGMFCGGGG 360 AGNAMEQLQW DC

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWAQIA  60
KHLPGRTDNE VKNFWNSCIK KKLIAQGLDP KTHNLLPASK TLLHGGGGGG AANPSGNGLA  120
QFQSNNGAAA AGTTPFTISS PAKAAAYDVA PPAIPPALYD VVLPANPAGG MLMAHDHHHH  180
HQVAAAAAPV GYPYADHGGN GGGVLMSFRD QNAGVHGAAS MDFMNGSSSS SSMEQLGGGG  240
GMSSNGNGSF SASMAAFMDE EAAMWATAVA PPGMGGLAGM DQVAQQQQQQ QVLVQDAAVG  300
VAPTTLMMHG GGAATAGAMV VDKSVEMVDV SSAVYGGATA TAFDLDLMVE SCGMFCGGGG  360
AGNAMEQLQW DC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	8e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G14800.1