PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G15250.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 219aa MW: 22307.5 Da PI: 10.8356

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G15250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.7	2.6e-41	112	189	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dlsea +y+rrhkvC++hsk pvvlv+gl+qrfCqqCsrfhel+efD++krsCrrrLa+hnerrrk++a OGLUM07G15250.1 112 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAA 189 6**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MDRKDKARKN FSSSSSSSAA SMAALAAAAA AGDGGAALPS PMEEDKKPRL VASSLAPVAG 60 GGGGGSSSSA AVAAGASSSS SSSSMATAAR RGASRAGGGA PSGGGGGGGG PRCQVERCGV 120 DLSEAGRYNR RHKVCQTHSK EPVVLVAGLR QRFCQQCSRF HELTEFDDAK RSCRRRLAGH 180 NERRRKSAAD TAHGENCRHA DQDAGRSHQG TGNPPFQIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	3e-37	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G15250.1