PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G17270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 216aa    MW: 23947.2 Da    PI: 8.328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G17270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-1156103454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  OGLUM07G17270.1  56 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILNDAIRVMAEL 103
                      6789**********************9...9**************998777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MASPEGSTWQ QQQHVAPATA APNTCAEING SVDCEHGKEQ PTNKRPRSES GTRPSSKACR  60
EKVRRDKLNE RFLELGAVLE PGKTPKMDKS SILNDAIRVM AELRSEAQKL KESNESLQEK  120
IKELKAEKNE LRDEKQKLKA EKESLEQQIK FLNARPSFVP HPPVIPATAF TAPQGQAAGQ  180
KLMMPVIGYP GFPMWQFMPP SDVDTTDDTK SCPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-80bHLH family protein