PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G17270.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 259aa    MW: 28311.2 Da    PI: 6.294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G17270.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.8e-1199146454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  OGLUM07G17270.3  99 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILNDAIRVMAEL 146
                      6789**********************9...9**************998777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MASPEGSTWV FDCPLMDDLA AAAGFDAAPA GGFYWTTPAP PQAALQPPPP PQQQQQHVAP  60
ATAAPNTCAE INGSVDCEHG KEQPTNKRPR SESGTRPSSK ACREKVRRDK LNERFLELGA  120
VLEPGKTPKM DKSSILNDAI RVMAELRSEA QKLKESNESL QEKIKELKAE KNELRDEKQK  180
LKAEKESLEQ QIKFLNARPS FVPHPPVIPA TAFTAPQGQA AGQKLMMPVI GYPGFPMWQF  240
MPPSDVDTTD DTKSCPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-77bHLH family protein