PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G17700.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 225aa    MW: 24892.9 Da    PI: 4.5982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G17700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-0663102555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + e+ErrRR r+N  ++ Lr ++ k            ++L  A+e+Ik+Lq
  OGLUM07G17700.1  63 NLEAERRRRGRLNGNIFALRAVMSKE-----------ATLSDAIEHIKNLQ 102
                      5689*****************99886...........6***********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MPRRARARDS GGEEVKVEDD FVDSVLNFGG GGGGEEDGDD GEEEQQQQQA AAVAMGKEFK  60
SKNLEAERRR RGRLNGNIFA LRAVMSKEAT LSDAIEHIKN LQNEVLELQR QLGDSPGEAW  120
EKQGSASCSE SFVPTENAHY QGQVELISLG SCKYNLKIFW TKRAGLFTKV LEALCSYKVQ  180
VLSLNTISFY GYAESFFTIE VKGEQDVVMV ELRSLLSSIV EVPSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-16bHLH family protein