PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G18250.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 365aa MW: 39597.6 Da PI: 7.0918

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G18250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W+t ++ g+ R++k+c++rw +yl OGLUM07G18250.1 14 KGPWTPEEDEKLVAYIKEHGQGNWRTLPKNAGLSRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ OGLUM07G18250.1 67 RGRFSFEEEEAIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK EHGQGNWRTL PKNAGLSRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHAPRL DLLDLTSLLK PAAAAAYYPT QADLDTLRAL EPLAGYPDLL RLASAILPAA 180 TTTGAAAAAA AAEQAQLLLP WLLQAQMAQQ QQQVTPPPQA AATEQFLQAT STACHQMPGL 240 VHASPTQQLA QQPQDHMAAA TCHRRGAVQH PSYDNQLDYV PALMQMASDA SNLQQWSSTV 300 SSSNNHNVNS GVSTPSSSPA AAGQINSSST TTTTTYGLNA SGDVDDAGLL INMHLSELLD 360 VSDYM

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK EHGQGNWRTL PKNAGLSRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRL DLLDLTSLLK PAAAAAYYPT QADLDTLRAL EPLAGYPDLL RLASAILPAA  180
TTTGAAAAAA AAEQAQLLLP WLLQAQMAQQ QQQVTPPPQA AATEQFLQAT STACHQMPGL  240
VHASPTQQLA QQPQDHMAAA TCHRRGAVQH PSYDNQLDYV PALMQMASDA SNLQQWSSTV  300
SSSNNHNVNS GVSTPSSSPA AAGQINSSST TTTTTYGLNA SGDVDDAGLL INMHLSELLD  360
VSDYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	9e-87	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G18250.1