PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G18530.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 940aa MW: 104207 Da PI: 8.2497

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G18530.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	7.9e-19	456	555	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e+ OGLUM07G18530.2 456 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 547 89************************777788889***********99899999999.*******************987.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ OGLUM07G18530.2 548 KLVMGFRK 555 77777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT 60 PQHQQQQQQQ QGPPGHAPPQ QRPRICFNAH CKDPKSDGPR RRGWRLRNGD FAELCDRCYH 120 SFEHGGFCET FHLEVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAM 180 APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE 240 FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA 300 YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDSCSSV STTFKLDSHH PSILKDDPSA 360 VPAGLSPNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM 420 DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA 480 YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF 540 SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVPPPPEAN NKVVVPDSSP NAAVPRPIKV 600 NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFRMDSEES 660 MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC 720 EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPDGLDTLAN 780 LAILGEGESL PSQPTTRHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC MTVRRRFRTL 840 MMRREKRQQS EKDSGVPRKR EPGQSSEPVP QSGSGAHPTS TSSPPPRADT NGEGPEDMSI 900 DNKRTSSPVK NQIDLNSQPE REDEQSPKSD ATRLLRDNPT

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence

MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT  60
PQHQQQQQQQ QGPPGHAPPQ QRPRICFNAH CKDPKSDGPR RRGWRLRNGD FAELCDRCYH  120
SFEHGGFCET FHLEVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAM  180
APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE  240
FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA  300
YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDSCSSV STTFKLDSHH PSILKDDPSA  360
VPAGLSPNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM  420
DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA  480
YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  540
SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVPPPPEAN NKVVVPDSSP NAAVPRPIKV  600
NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFRMDSEES  660
MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC  720
EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPDGLDTLAN  780
LAILGEGESL PSQPTTRHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC MTVRRRFRTL  840
MMRREKRQQS EKDSGVPRKR EPGQSSEPVP QSGSGAHPTS TSSPPPRADT NGEGPEDMSI  900
DNKRTSSPVK NQIDLNSQPE REDEQSPKSD ATRLLRDNPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-141	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G18530.2