PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G19030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 285aa MW: 31281 Da PI: 8.2494

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G19030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.3e-06	257	279	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H OGLUM07G19030.1 257 VCPKCSKAFRDPVLLVEHVERdH 279 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHHRSYTSH QCPNANQKDV TVLICPLCAK 60 GVRLNPNEDP NITWDTHVNS DCDPSNYQKV TKKKKCPVPG CRETLTFSNT IRCKDCTKEH 120 CLKHRFGPDH KCPGPRKPES TFPFGNMLRR SQKAESHSNS NSSSTSSSWW SSSLLTAATS 180 FKSSAEAGMQ KLSTATTQAI QKAKDGISTS SSNSGDLVEQ CVQCPATFST VGALIEHCEK 240 SHQSNSQSSR SRVTVDVCPK CSKAFRDPVL LVEHVERDHG GTSRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-108	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G19030.1