PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G19790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 631aa MW: 67370.8 Da PI: 6.1136

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G19790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H OGLUM07G19790.1 59 FVCEVCGKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	15.6	4.6e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ + +Lk H +t+ OGLUM07G19790.1 137 WTCQRCGKRYAVQADLKAHTKTC 159 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MPPNPTGTEG EPGPAVEPAP AGAGAAPVVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV 60 CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHNPTRALGD 120 LTGIKKHFCR KHGEKRWTCQ RCGKRYAVQA DLKAHTKTCG TREYRCDCGT LFTRRDSFVT 180 HRAFCGALVE ETGRVLAVPA PPSPRPPDLE AEENVDKDKE EEVKEKEKEK ELEENEDSPV 240 AEVYEPQPSQ AVAEVPQQCA PSPPPPPPIL QEHPQPVVAV VPNVDEQEVV AKPAVIAKIE 300 VEDERDEDVC FQEADRYKDA ELEDSNLLDN DTPMLPCFLP SPSEAIGTDG SSTSCGAGSS 360 VTNAIAPATT TSTFAGLFAS VTTSSTPQSR SLRDLIGVDP TFLCLAIGAP SSLFPQTNAS 420 DPCSFAPPPA PHMSATALLQ KAAEVGASQS SSSFLKEFGL AASTSSSPPS KLSQGRFTTG 480 NTPTTSHPHP HPHPHPHPPQ GRYMDNVPQP PPPAKLPHRM FTDNSVQQWH HRSNQQMEME 540 PGPMLPGGLG LGLTYDSGNS GLPDLMMGPS ALYGPKPATL DFLGLGIGGT MGGSTANGGL 600 PALMVGGELD MGSAQAPWEE AKRKTNGRTI L

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MPPNPTGTEG EPGPAVEPAP AGAGAAPVVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV  60
CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHNPTRALGD  120
LTGIKKHFCR KHGEKRWTCQ RCGKRYAVQA DLKAHTKTCG TREYRCDCGT LFTRRDSFVT  180
HRAFCGALVE ETGRVLAVPA PPSPRPPDLE AEENVDKDKE EEVKEKEKEK ELEENEDSPV  240
AEVYEPQPSQ AVAEVPQQCA PSPPPPPPIL QEHPQPVVAV VPNVDEQEVV AKPAVIAKIE  300
VEDERDEDVC FQEADRYKDA ELEDSNLLDN DTPMLPCFLP SPSEAIGTDG SSTSCGAGSS  360
VTNAIAPATT TSTFAGLFAS VTTSSTPQSR SLRDLIGVDP TFLCLAIGAP SSLFPQTNAS  420
DPCSFAPPPA PHMSATALLQ KAAEVGASQS SSSFLKEFGL AASTSSSPPS KLSQGRFTTG  480
NTPTTSHPHP HPHPHPHPPQ GRYMDNVPQP PPPAKLPHRM FTDNSVQQWH HRSNQQMEME  540
PGPMLPGGLG LGLTYDSGNS GLPDLMMGPS ALYGPKPATL DFLGLGIGGT MGGSTANGGL  600
PALMVGGELD MGSAQAPWEE AKRKTNGRTI L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-93	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G19790.1