PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G20190.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HRT-like

Protein Properties

Length: 622aa MW: 68669.5 Da PI: 9.6559

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G20190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.2	2.7e-18	311	340	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledGs C ++Pv+gRKRCe HKG+R OGLUM07G20190.1 311 VCGVMLEDGSSCLDHPVQGRKRCELHKGRR 340 7****************************9 PP
2	HRT-like	52.7	7.1e-17	585	614	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+Ck+qP+ gRKRC+ HKG+R OGLUM07G20190.1 585 ICGARASDGSPCKNQPIAGRKRCAMHKGQR 614 8****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MPAASAAVPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HAAGKEGIQR YRVLNLPENF 60 PGLYELGVAR ASDEGIRAAR RWNGSGGGGV VVVYLGQADS VRARLQQYGR TGSHLDAGNP 120 PPSAGEAETN TRATGNGLFR EVFVRGYSLV FRCALMGNKQ EAEKTEARLL RVFDYAWNKL 180 QNGGLRREEI LIKLEQGAVN NRSSLLSRVR HFKQEVFREK AGIKISRNGS VDVSSGIMKN 240 MLPRIRTFVG FRPQLVNSGD NVDKEIGIRW KNTSEGNSYG KQARRSSEGY KVKRVNVIKR 300 RTMPEQDSND VCGVMLEDGS SCLDHPVQGR KRCELHKGRR LGRITVNPKG SSCSYSCQVE 360 IPVVESISPL TENESESDQA QQTSELLSKF LPATVKKSSR PWYSFEAKEI KTGEAPIEDG 420 KQETSEVIDI CEAKKSDNSA CTNKVISGSK KCQLHNGCKA EEFVSSRVID LLQNEEKVKS 480 MTVDKLSGEE ISHGKYQSQE NQPSGRMWFE LIKLQNPTST LSSKGQGRQK RVTGNVAAIC 540 EALTDNRCRE TIPMAGRERC DAHEGIKVTD ASSVPFSGSS GWPSICGARA SDGSPCKNQP 600 IAGRKRCAMH KGQRACRTPS ID

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MPAASAAVPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HAAGKEGIQR YRVLNLPENF  60
PGLYELGVAR ASDEGIRAAR RWNGSGGGGV VVVYLGQADS VRARLQQYGR TGSHLDAGNP  120
PPSAGEAETN TRATGNGLFR EVFVRGYSLV FRCALMGNKQ EAEKTEARLL RVFDYAWNKL  180
QNGGLRREEI LIKLEQGAVN NRSSLLSRVR HFKQEVFREK AGIKISRNGS VDVSSGIMKN  240
MLPRIRTFVG FRPQLVNSGD NVDKEIGIRW KNTSEGNSYG KQARRSSEGY KVKRVNVIKR  300
RTMPEQDSND VCGVMLEDGS SCLDHPVQGR KRCELHKGRR LGRITVNPKG SSCSYSCQVE  360
IPVVESISPL TENESESDQA QQTSELLSKF LPATVKKSSR PWYSFEAKEI KTGEAPIEDG  420
KQETSEVIDI CEAKKSDNSA CTNKVISGSK KCQLHNGCKA EEFVSSRVID LLQNEEKVKS  480
MTVDKLSGEE ISHGKYQSQE NQPSGRMWFE LIKLQNPTST LSSKGQGRQK RVTGNVAAIC  540
EALTDNRCRE TIPMAGRERC DAHEGIKVTD ASSVPFSGSS GWPSICGARA SDGSPCKNQP  600
IAGRKRCAMH KGQRACRTPS ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-71	HRT-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G20190.1