PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G20390.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 473aa    MW: 50548.4 Da    PI: 5.2589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G20390.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.53.3e-91774702373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevsP 89 
                      ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL +r +r  ++ +ka+++  ++  +    ++++++a++l  f +++P
  OGLUM07G20390.1  77 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVSRASR--TGACKAVTAAVADAVEsaalHVHRFTAVELasFIDLTP 168
                      79***************************************************9..44454443333322221234666666666689****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
                      +++f++ +aN aI+eaveg   vHi+D++ ++++Q p+L++ La R+egpp lR+T+ + + s         +ee+g +L +fA++ +++++f+
  OGLUM07G20390.1 169 WHRFGYTAANAAIVEAVEGFPVVHIVDLSTTHCMQIPTLIDMLAGRAEGPPILRLTVADVAPSApppaLDIPYEELGAKLVNFARSRNMSMDFR 262
                      *********************************************************9886666777777889********************* PP

             GRAS 180 vl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                      v+       +++ +++l++++L  + gEal+Vn+++ lh+++de++ + s          r+ +Lk ++ l P++vvvv+++ad ++++ + r+
  OGLUM07G20390.1 263 VVptspadaLTSLVDQLRVQQLVSDGGEALVVNCHMLLHTVPDETAGSVSlttaqppvsLRTMLLKSLRALDPTLVVVVDEDADFTAGDVVGRL 356
                      **887666555566677777777777****************887665555445566657899******************************* PP

             GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                        a+++ +  +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e  ++W +r+++aGF++++++e+aa ++k++l+ ++  g+ +
  OGLUM07G20390.1 357 RAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRARWGQRMRAAGFRAAAFGEEAAGEVKAMLNDHA-AGWGM 448
                      *******************************.********************************************************.88999 PP

             GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                      + e++ lvl+Wk++++v++SaW
  OGLUM07G20390.1 449 KREDDDLVLTWKGHNVVFASAW 470
                      9********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MMQFTHTAPP PPPLHPNGHG LGLGLYLDVG ATRGGGGARP WSSSSSTTTL GGSGYFPSSA  60
AASKISLGNL NSTGCMEQLL VHCANAIEAN DATLTQQILW VLNNIAPADG DSNQRLTAAF  120
LCALVSRASR TGACKAVTAA VADAVESAAL HVHRFTAVEL ASFIDLTPWH RFGYTAANAA  180
IVEAVEGFPV VHIVDLSTTH CMQIPTLIDM LAGRAEGPPI LRLTVADVAP SAPPPALDIP  240
YEELGAKLVN FARSRNMSMD FRVVPTSPAD ALTSLVDQLR VQQLVSDGGE ALVVNCHMLL  300
HTVPDETAGS VSLTTAQPPV SLRTMLLKSL RALDPTLVVV VDEDADFTAG DVVGRLRAAF  360
NFLWIPYDAV DTFLPKGSEQ RRWYEAEVGW KVENVLAQEG VERVERQEDR ARWGQRMRAA  420
GFRAAAFGEE AAGEVKAMLN DHAAGWGMKR EDDDLVLTWK GHNVVFASAW APS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-151GRAS family protein