PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G20440.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 193aa    MW: 19792.3 Da    PI: 8.6257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G20440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000593961123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F +   L  H  +H
  OGLUM07G20440.1 39 FRCSLCGKAFASYQALGGHKASH 61
                     89**********99998888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MEQGGDLISL CLMALAAAAR GESTALALAL APPPPELHFR CSLCGKAFAS YQALGGHKAS  60
HRKPSAAAAP PPAHRDVVVA AAPASSGGVA ADADAASEAD RRRRRHVCSL CRRGFATGQA  120
LGGHKRFHYL HGPSVSATVS SAATAASVGA AFDLNVAPIK EIAGEQRRCG EEADDDDEAE  180
SPSPAKKPRR RPG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.12e-11C2H2 family protein