PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G21410.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28272.7 Da PI: 9.2925

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G21410.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.6e-31	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRrng+lKKA+E+SvLCda+va+i+fs++gklye+ss OGLUM07G21410.3 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSS 59 8***********************************************96 PP
2	K-box	90.8	2.4e-30	84	172	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++e++ e+ Lk++++ Lq++qR+llGe+L++L+ keLqqLe+qLe slk+iRskKn+ll+e+i+elqkkek+l+++n+ L+k + OGLUM07G21410.3 84 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTTKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLM 172 467789*****************************************************************************998755 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVALIVFST KGKLYEFSSH 60 SSMEGILERY QRYSFDERAV LEPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLDTL 120 TTKELQQLEH QLEYSLKHIR SKKNQLLFES ISELQKKEKS LKNQNNVLQK LMETEKEKNN 180 AIINTNREEQ NGATPSTSSP TPVTAPDPIP TTNNSQSQPR GSGESEAQPS PAQAGNSKLP 240 PWMLRTSHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-80	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G21410.3