PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G23470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 344aa MW: 36537.7 Da PI: 6.785

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G23470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl OGLUM07G23470.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	53.5	5.4e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y OGLUM07G23470.1 67 RGAFSQEEEDLIIHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MAKRAGGARK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRQRG 120 IDPATHKPLA EVVAAAACAR TPAVFSDAEL ILSSIGAQPP PESYMYYDGS RYSTECGAAS 180 VGGDGSLSSL SGYSQATAEF AVDGASASAL LHCGGGGPTS SGGGAPPAPT AVVIPSVSSS 240 STLNSMVGLS PAATTTTTTD EQYGNTSHLP WLELGPSTTT PSSSSAAATV DHYGAALDEL 300 KWSDYVFDGY NHQLPPYNHG GIYGGGDSKD TAVHFDDHAL GNWC

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MAKRAGGARK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRQRG  120
IDPATHKPLA EVVAAAACAR TPAVFSDAEL ILSSIGAQPP PESYMYYDGS RYSTECGAAS  180
VGGDGSLSSL SGYSQATAEF AVDGASASAL LHCGGGGPTS SGGGAPPAPT AVVIPSVSSS  240
STLNSMVGLS PAATTTTTTD EQYGNTSHLP WLELGPSTTT PSSSSAAATV DHYGAALDEL  300
KWSDYVFDGY NHQLPPYNHG GIYGGGDSKD TAVHFDDHAL GNWC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	7e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G23470.1