PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G23880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 617aa MW: 67766.5 Da PI: 4.2895

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G23880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	108	126	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 kC Cg++Fs++s+L H+ OGLUM07G23880.1 108 KCWSCGQVFSSNSELCGHL 126 7***************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MATREHELRP EQERLGEDRE EYEDGEEEEE EGEEGWDDWE SDGDDAGGGG GLLCLFCSAR 60 FDSESSLFSH CASEHRFDFY RVVKETGMDF YGCIKLINFV RSKVAENKCW SCGQVFSSNS 120 ELCGHLHALE IPQLEGKVPW GDDVYLKPFL EDDSLLHSLS VFDDDDEDDC GMPMEKGGCS 180 AGNGSLAETC ESNLKSIIND GSDVIDRFEK TCTIESTDGE CSGSLAQEPS DKQLKIARAS 240 AAARGIKSVD ESYFGSYSSF GIHREMLGDK VRTEAYRDAL LGNPSLMNGA TVLDVGCGTG 300 ILSLFAAKAG ASRVIAVDGS AKMVSVATEV AKSNGFLYDE NMEMQQKRDT QVITVVHTKA 360 EELNHKIQVP SNKFDVLVSE WMGYCLLYES MLSSVLYARD HFLKPGGAIL PDTATIFGAG 420 FGKGGTSLPF WENVYGFDMS CIGKEVTGNS ARFPVVDILA SEDIVTETAV LHSFDLATMK 480 ENEMDFTSSF ELRLSESGVS QSGVTWCYGI ILWFDTGFTN RFCKEKPVNL STSPFSTPTH 540 WSQTIFTFEE PIAMAKEESA VVSSASVGTD ECPAVMIRSR ISIVRASEHR SIDISIETTG 600 ISSDGRKRSW PVQIFNL

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MATREHELRP EQERLGEDRE EYEDGEEEEE EGEEGWDDWE SDGDDAGGGG GLLCLFCSAR  60
FDSESSLFSH CASEHRFDFY RVVKETGMDF YGCIKLINFV RSKVAENKCW SCGQVFSSNS  120
ELCGHLHALE IPQLEGKVPW GDDVYLKPFL EDDSLLHSLS VFDDDDEDDC GMPMEKGGCS  180
AGNGSLAETC ESNLKSIIND GSDVIDRFEK TCTIESTDGE CSGSLAQEPS DKQLKIARAS  240
AAARGIKSVD ESYFGSYSSF GIHREMLGDK VRTEAYRDAL LGNPSLMNGA TVLDVGCGTG  300
ILSLFAAKAG ASRVIAVDGS AKMVSVATEV AKSNGFLYDE NMEMQQKRDT QVITVVHTKA  360
EELNHKIQVP SNKFDVLVSE WMGYCLLYES MLSSVLYARD HFLKPGGAIL PDTATIFGAG  420
FGKGGTSLPF WENVYGFDMS CIGKEVTGNS ARFPVVDILA SEDIVTETAV LHSFDLATMK  480
ENEMDFTSSF ELRLSESGVS QSGVTWCYGI ILWFDTGFTN RFCKEKPVNL STSPFSTPTH  540
WSQTIFTFEE PIAMAKEESA VVSSASVGTD ECPAVMIRSR ISIVRASEHR SIDISIETTG  600
ISSDGRKRSW PVQIFNL

Link Out ? help Back to Top
Ensembl	OGLUM07G23880.1