PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G25580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 378aa MW: 40089.6 Da PI: 4.7653

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G25580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.8	1.4e-05	21	61	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +r+C+ ++ ++ +C+ ++ lC C + H H OGLUM07G25580.1 21 ARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAAntvstrH 61 689***************************99654455445 PP
2	CCT	62.9	1e-21	337	377	3	43
CCT 3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+ OGLUM07G25580.1 337 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKS 377 5689***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MARDDDPAKK LAVDGGVAAA ARCCDFCGGL PAVVYCRADS ARLCLPCDRH VHAANTVSTR 60 HARAPLCSAC RAAPAAAFRR GDGFLCSSCD FDERLRRGSI GGGGDELPLD DRAAVEGYTG 120 CPSIGELAAI LGVVGGDSDK PADDGWWSAS WEEEAPQVLS LDDIIVPTTS CHGLRPLLTP 180 PSPESSPDNG ELDGEVLRQL GELARSEAAA QATFVAGDQL ASWASPEFTS GHGDFGIEAA 240 STTVPSCENE TWIMSTDCTD PTDASKTDIA REEAPASSSA EPCLSSLVEI SEICPSMSYS 300 GSGIDNGGHD PSTLAIMPTQ ALPKKGVYDI AYPDRGTVIS RYKEKRKNRR FDKQIRYESR 360 KARADGRLRI KGRFAKSN

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MARDDDPAKK LAVDGGVAAA ARCCDFCGGL PAVVYCRADS ARLCLPCDRH VHAANTVSTR  60
HARAPLCSAC RAAPAAAFRR GDGFLCSSCD FDERLRRGSI GGGGDELPLD DRAAVEGYTG  120
CPSIGELAAI LGVVGGDSDK PADDGWWSAS WEEEAPQVLS LDDIIVPTTS CHGLRPLLTP  180
PSPESSPDNG ELDGEVLRQL GELARSEAAA QATFVAGDQL ASWASPEFTS GHGDFGIEAA  240
STTVPSCENE TWIMSTDCTD PTDASKTDIA REEAPASSSA EPCLSSLVEI SEICPSMSYS  300
GSGIDNGGHD PSTLAIMPTQ ALPKKGVYDI AYPDRGTVIS RYKEKRKNRR FDKQIRYESR  360
KARADGRLRI KGRFAKSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	2e-36	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G25580.1