PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G26430.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 949aa MW: 104115 Da PI: 7.253

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G26430.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.5	6e-19	363	462	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ ++ OGLUM07G26430.2 363 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGG 454 99************************555567778***********99899999999.*******************887.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ OGLUM07G26430.2 455 KLVMGFRK 462 77877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence
MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV 60 FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV 120 PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS 180 KILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL 240 SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR 300 PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV 360 PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN 420 NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG 480 SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG 540 SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED 600 YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS 660 KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG 720 NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK 780 QRQSEREETE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRE GDVTMFDKVD INKGHIDLNF 840 HPTAVRDKER HGGQPRVSMV SLLEVASRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ 900 PAPVESEERT SNNDGGRVAT AEQPESMTVD EAGDNQPDKA AGDSAAALA

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence

MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV  60
FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV  120
PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS  180
KILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL  240
SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR  300
PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV  360
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN  420
NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG  480
SILGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSIY DHHVNSADGD VSWLKTDKFG  540
SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED  600
YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDS  660
KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAF ATAAVYGDVG  720
NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK  780
QRQSEREETE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRE GDVTMFDKVD INKGHIDLNF  840
HPTAVRDKER HGGQPRVSMV SLLEVASRPL ENYMKQNGLT SLAGEQGSSS TCTGAATVPQ  900
PAPVESEERT SNNDGGRVAT AEQPESMTVD EAGDNQPDKA AGDSAAALA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	769	780	RRRFKTLMMRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-180	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G26430.2