PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G00080.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 362aa MW: 39895.5 Da PI: 7.7295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G00080.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.2	6.2e-13	255	339	3	83
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 k+lt+sdv++ gr+vlpkk ae+ + ++ + l + d +W++k++y ++ks++y+l eF k +gL++gD+++++ OGLUM08G00080.2 255 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMDD--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 339 899****************9998844445565566666..3446*****777777777777.99*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PLPNPFPAPS SGAEPPHPHN HNHNHNHNHN 60 THNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS 120 PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI 180 CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA 240 TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT 300 WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT 360 NP

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PLPNPFPAPS SGAEPPHPHN HNHNHNHNHN  60
THNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS  120
PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI  180
CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA  240
TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT  300
WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT  360
NP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	3e-34	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G00080.2