PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G00990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23590.2 Da    PI: 6.9244
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G00990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF756.1e-241058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+ s
  OGLUM08G00990.1 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLS 58
                     8*********************************************865 PP
2K-box31.95.4e-1280158986
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                      ++  +    +qe+  Lk+ei+ Lq+ +R + G+  +  ++++eL+ Le+ Le  + +iRs K+ +l++  e lq+k  e
  OGLUM08G00990.1  80 ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 158
                      4455556679**********************998626************************************99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLSTT  60
GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRYIY GNRANEHMTV  120
EELNALERYL EIWMYNIRSA KEGMLKAANE ILQEKIVEQN GLIDVGMMVA DQQNGHFSTV  180
PLLEEITNPL TILSGYSTCR GSEMGYSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-51MIKC_MADS family protein