PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G02420.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 250aa    MW: 27055.7 Da    PI: 5.8206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G02420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-1082130354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  OGLUM08G02420.1  82 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 130
                      67889**********************9...99*************988777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MSGTPADGGG GGGGGSGDDW FLDCGILEDL PAAACGAFPW DASPSCSNPS VEVSSYVNTT  60
SYVLKEPGSN KRVRSGSCGR PTSKASREKI RRDKMNDRFL ELGTTLEPGK PVKSDKAAIL  120
SDATRMVIQL RAEAKQLKDT NESLEDKIKE LKAEKDELRD EKQKLKVEKE TLEQQVKILT  180
ATPAYMPHPT LMPAPYPQAP LAPFHHAQGQ AAGQKLMMPF VGYPGYPMWQ FMPPSEVDTS  240
KDSEACPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-72bHLH family protein