PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 361aa MW: 40192.9 Da PI: 6.5969

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl OGLUM08G03030.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	55.6	1.2e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++ OGLUM08G03030.1 67 RGRFTAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TAEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPA 120 AAAAAATMTS PNNPPPCSTA TSDHHHLPPP AFGGADHHLQ LDTIINQNLI SSLPPKLAGG 180 DDSPPAVPGL PHHCPLFMFD ATTTGAGGAV SPPPPSSLIP THLHHHHHPF IASFTAAMAA 240 DTPSYLPPLV DGMAAMGAAM DCSLEDGQTA AAMAATNGYY QHHQKHQQLE IELEEEEQRQ 300 LGHHHHQHHH EHEHEHENHQ WDEEEAQHLL MWDQEVLTSS NLEAMQSGAH SLLFMGPNDH 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TAEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPA  120
AAAAAATMTS PNNPPPCSTA TSDHHHLPPP AFGGADHHLQ LDTIINQNLI SSLPPKLAGG  180
DDSPPAVPGL PHHCPLFMFD ATTTGAGGAV SPPPPSSLIP THLHHHHHPF IASFTAAMAA  240
DTPSYLPPLV DGMAAMGAAM DCSLEDGQTA AAMAATNGYY QHHQKHQQLE IELEEEEQRQ  300
LGHHHHQHHH EHEHEHENHQ WDEEEAQHLL MWDQEVLTSS NLEAMQSGAH SLLFMGPNDH  360
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-84	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G03030.1