PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03510.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 781aa MW: 84940.8 Da PI: 6.4766

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03510.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	81	107	1	28
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r rWT+ E+ ++++a k++G W +I OGLUM08G03510.3 81 RERWTEAEHNRFLEALKLYGRA-WQRIE 107 78*****************88.9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence
MQLLSRRRRG RRSEAASLVG IALLALEGDG AVGHSFGGGG ARIKEVFGLR RLTAIGSIQI 60 NSSGEEAVVK VRKPYTITKQ RERWTEAEHN RFLEALKLYG RAWQRIEAIN NGTSPGQAHD 120 IDIPPPRPKR KPNSPYPRKS CLSSETSTRE VQNDKATISN MTNNSTAQMA GDAALEKLQR 180 KEISEKGSCS EVLNLFREVP SASFSSVNKS SSNHGASRGL EPTKTEVKDV VILERDSISN 240 GAGKDAKDIN DQEMERLNGI HISSKPDHSH ENCLDTSSQQ FKPKSNSVET TYVDWSAAKA 300 SHYQMDRNGV TGFQATGTEG SHPDQTSDQM GGASGTMNQC IHPTLPVDPK FDGNAAAQPF 360 PHNYAAFAPM MQCHCNQDAY RSFANMSSTF SSMLVSTLLS NPAIHAAARL AASYWPTVDG 420 NTPDPNQENL SESAQGSHAG SPPNMASIVA ATVAAASAWW ATQGLLPLFP PPIAFPFVPA 480 PSAPFSTADV QRAQEKDIDC PMDNAQKELQ ETRKQDNSEA MKVIVSSETD ESGKGEVSLH 540 TELKISPADK ADTKPAAGAE TSDVFGNKKK QDRSSCGSNT PSSSDIEADN APENQEKAND 600 KAKQASCSNS SAGDNNHRRF RSSASTSDSW KEVSEEVVVY QHSAYSHLSY SLNIHHCFSN 660 SHFCCQGRLA FDALFSRERL PQSFSPPQVE GSKEISKEEE DEVTTVTVDL NKNAAIIDQE 720 LDTADEPRAS FPNELSNLKL KSRRTGFKPY KRCSVEAKEN RVPASDEVGT KRIRLESEAS 780 T

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence

MQLLSRRRRG RRSEAASLVG IALLALEGDG AVGHSFGGGG ARIKEVFGLR RLTAIGSIQI  60
NSSGEEAVVK VRKPYTITKQ RERWTEAEHN RFLEALKLYG RAWQRIEAIN NGTSPGQAHD  120
IDIPPPRPKR KPNSPYPRKS CLSSETSTRE VQNDKATISN MTNNSTAQMA GDAALEKLQR  180
KEISEKGSCS EVLNLFREVP SASFSSVNKS SSNHGASRGL EPTKTEVKDV VILERDSISN  240
GAGKDAKDIN DQEMERLNGI HISSKPDHSH ENCLDTSSQQ FKPKSNSVET TYVDWSAAKA  300
SHYQMDRNGV TGFQATGTEG SHPDQTSDQM GGASGTMNQC IHPTLPVDPK FDGNAAAQPF  360
PHNYAAFAPM MQCHCNQDAY RSFANMSSTF SSMLVSTLLS NPAIHAAARL AASYWPTVDG  420
NTPDPNQENL SESAQGSHAG SPPNMASIVA ATVAAASAWW ATQGLLPLFP PPIAFPFVPA  480
PSAPFSTADV QRAQEKDIDC PMDNAQKELQ ETRKQDNSEA MKVIVSSETD ESGKGEVSLH  540
TELKISPADK ADTKPAAGAE TSDVFGNKKK QDRSSCGSNT PSSSDIEADN APENQEKAND  600
KAKQASCSNS SAGDNNHRRF RSSASTSDSW KEVSEEVVVY QHSAYSHLSY SLNIHHCFSN  660
SHFCCQGRLA FDALFSRERL PQSFSPPQVE GSKEISKEEE DEVTTVTVDL NKNAAIIDQE  720
LDTADEPRAS FPNELSNLKL KSRRTGFKPY KRCSVEAKEN RVPASDEVGT KRIRLESEAS  780
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	3e-29	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G03510.3