PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G04040.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 192aa    MW: 21011.2 Da    PI: 4.3582
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G04040.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.92.9e-32141191100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 
                      aCaaC++++  +C+++C lapyfpa++pk+f++++ +FG++++l + +a ++  r      + m+++vy A+ar++dP+ Ga+g i+klqqql+
  OGLUM08G04040.1  14 ACAACAHQGAsSCPPNCGLAPYFPADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRIRKLQQQLD 107
                      7********999************************************976555666666899******************************* PP

           DUF260  89 qlkaelallkee 100
                      +lkae a+++++
  OGLUM08G04040.1 108 RLKAERARQHHP 119
                      *******99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MASPSPPTTT TQQACAACAH QGASSCPPNC GLAPYFPADK PKRFWYARLM FGMERILGFS  60
EAEKQGIRPN GSTVISMAAV VYLADARVED PILGAYGRIR KLQQQLDRLK AERARQHHPA  120
TASPAPADNV ALEPEPEPFH QPPAQPSTPP ALAIPDEDEE EEEDDDDDED EEEEGHAPVD  180
DDVPCAKRRR TN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-13LBD family protein