PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G05080.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 358aa    MW: 37057.7 Da    PI: 6.7992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G05080.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000192442831054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  OGLUM08G05080.2 244 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 283
                      556667777777888888887.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRDG SGFHGYMSSS RNDHHTNHHH HQINTPSLMS NSSSNNGVML  120
QEHQHDQNYQ FLSNLGFELL SSPTSPYGGG GGFRSSLLRS LTEPAAAAKP NDSPGFQQYH  180
HHQPAMNLQP PAAAAGREPL QFTNSTAAPF WNPSSGFTVA AEGTALGGAG ASPAQPTPAS  240
LAAKVRKEKL GDRVTALQQL VSPFGKTDTA SVLHETIEYI KFLHDQVGAL SAPYLKNRQQ  300
VPHLKNSTGV DNDGGEATAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-37bHLH family protein