PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G05080.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 442aa MW: 44479.7 Da PI: 6.5056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G05080.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00025	328	367	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++ L++l+ + +K + a++L +++eYIk L OGLUM08G05080.3 328 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 367 556667777777888888887.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF 60 GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG GVADPAAIAV 120 HAQTVAAGGG GGGVADPAAI AVHAQTVAAG GGGGGWNQQP FLDGSGFHGY MSSSRNDHHT 180 NHHHHQINTP SLMSNSSSNN GVMLQEHQHD QNYQFLSNLG FELLSSPTSP YGGGGGFRSS 240 LLRSLTEPAA AAKPNDSPGF QQYHHHQPAM NLQPPAAAAG REPLQFTNST AAPFWNPSSG 300 FTVAAEGTAL GGAGASPAQP TPASLAAKVR KEKLGDRVTA LQQLVSPFGK TDTASVLHET 360 IEYIKFLHDQ VGALSAPYLK NRQQVPHLKN STGVDNDGGE ATAASKRDLT GRGLCLVPIS 420 STFAVASETP VDFWTPFGAA FR

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG GVADPAAIAV  120
HAQTVAAGGG GGGVADPAAI AVHAQTVAAG GGGGGWNQQP FLDGSGFHGY MSSSRNDHHT  180
NHHHHQINTP SLMSNSSSNN GVMLQEHQHD QNYQFLSNLG FELLSSPTSP YGGGGGFRSS  240
LLRSLTEPAA AAKPNDSPGF QQYHHHQPAM NLQPPAAAAG REPLQFTNST AAPFWNPSSG  300
FTVAAEGTAL GGAGASPAQP TPASLAAKVR KEKLGDRVTA LQQLVSPFGK TDTASVLHET  360
IEYIKFLHDQ VGALSAPYLK NRQQVPHLKN STGVDNDGGE ATAASKRDLT GRGLCLVPIS  420
STFAVASETP VDFWTPFGAA FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	5e-37	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G05080.3