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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OGLUM08G06200.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | NAC | ||||||||
| Protein Properties | Length: 288aa MW: 31726.2 Da PI: 8.5858 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 160.1 | 8.6e-50 | 6 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
+ppGfrFhP+d+elv +yL +k+++ +i +vd++k+ePwdLp ++ + kewyfFs rd+kyatg+r+nrat+sgyWk
OGLUM08G06200.1 6 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYWK 96
79********************99888555541...1455546***************7666789***************************** PP
NAM 85 atgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129
atgkd++++++ + vg++ktLvfy+grapkg+kt+Wvmhe+rle
OGLUM08G06200.1 97 ATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 153
**********86666550..155566666***************************985 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 288 aa Download sequence |
MVEARMPPGF RFHPRDDELV LDYLLHKLAA GGRGGGVYGG GGGVAIVDVD LNKCEPWDLP 60 DAACVGGKEW YFFSLRDRKY ATGHRTNRAT RSGYWKATGK DRSITRRSSI SSGEPSSSAA 120 AAAVGMRKTL VFYRGRAPKG RKTEWVMHEF RLEPQPLHLK EDWVLCRVFY KTRQTIPSPS 180 SEEAVTLPNE LDLPAMPSLP PLIDAYIAFD SAPTTMPSMV GSYEQVSCFS GLPALPMKGS 240 ISFGDLLAMD TSAEKKAIRV LHNSNTAKLE LSPDWGQESG LSQMWNPQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G56010.2 | 2e-75 | NAC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM08G06200.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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