PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G06520.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 249aa    MW: 28233.8 Da    PI: 4.5635
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G06520.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC152.86.3e-48781811101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   +e++t+fk  +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifdf
  OGLUM08G06520.1  78 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDF 171
                      89******9777799******************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdi+  d++
  OGLUM08G06520.1 172 LVDIITDDKM 181
                      *****99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDPHSHKKAH EGLIGDNPDA YAVTTYQPVL MVEPSAAAAF PPAPQVAPAY PVNPMQLPEH  60
QQHAIQQVQQ LQQQQKEQLQ AFWADQMAEV EQMTEFKLPN LPLARIKKIM KADEDVKMIA  120
GEAPALFAKA CEMFILDMTL RSWQHTEEGR RRTLQRSDVE AVIKKTDIFD FLVDIITDDK  180
MKDDGMGSQA ASMVSPYTSG GMGFSFDLYP NQHHLAYMWP PQEQQEQWPP QEQQEQKQKQ  240
DSDGGGQDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.14e-51NF-YC family protein