PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G08120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 285aa MW: 30321.7 Da PI: 6.8478

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G08120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.4e-15	42	102	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ OGLUM08G08120.1 42 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 102 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.7	6e-34	41	103	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ OGLUM08G08120.1 41 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 103 689**********************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MDRTATASWE VMSRRGEQQQ QLMMQAPASH NNGGGGGGEP ARSRWAPKPE QILILESIFN 60 SGMVNPAKDE TARIRRLLER FGAVRDANVF YWFQNRRSRS RRRARQLQQA CGAALHQLPS 120 AAAAAGAGGG GGYYHHHHQP SSSPFLMHGG GGVGVVTSTA AAPAVAASGH SLADEVDGGG 180 DDDLFAISRQ MGLMARHGGG DHHYSSYADS DATQLSYQPT GTIQVFINGV AYDVPSGEAL 240 DMAGTFGRDA MLVHSSGEVL PVDEHGVLIN SLQMGECYYL VSKSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.1	7e-31	WOX family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G08120.1