PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G10180.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 837aa MW: 91689 Da PI: 8.5547

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G10180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	115	170	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk OGLUM08G10180.1 115 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 170 6677899************************************************8 PP
2	START	104.6	1.7e-33	321	549	7	204
HHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 7 aqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ++e++ k +++ p+W es+n++e+l k + + +++ + r++++v + +++lv++lld + +W e ++ +a t++ is OGLUM08G10180.1 321 ENESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIS 412 5666777788899999888899999******999553.3589999**********************.**99999***** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCE CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksngh 161 +g g lqlm aelq++sp vp d++f+R++ q g g w +vd S+d + ++ ss +R ++llpSg++ie+++ng+ OGLUM08G10180.1 413 TGlsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDASIDTILPGESktaqsivqtSSTAARrmeVRLLPSGCVIEEMENGY 506 ***********************************************98777766653333443222223455899********** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 sk+tw+ h+ +++r ++ l++sl++s a ga +wva lqr+ OGLUM08G10180.1 507 SKLTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 549 ***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MGRPVAPRLG SPLSSPAAAH AAAGAPAPSR AARWGRGSPR PCAVLAIPLV EVMDGELKLM 60 ASYVSKLKFI LQKDQQQEPH TANLLVLLGS SNQDKRNGLS QGENRMDTCT RKKPRRYQLL 120 TMQQKETLNR AFQSCPNPDR NDLKKLAKEL NMTETQIKYW FQNCRTKMKK FKNNEERKLL 180 QKENEELKKE NAELRNRMKN STCRACDLPL FHIDCRHWEN PMLNKGNHGV TSNLIPQAVS 240 SLLPSSSGFV ASGSNLSSNA VLMPVSAMPS SVLQPAPAVS GANFPILHNL SANANDGYTE 300 KNVLLDLANR AMEEFFSLMK ENESLVKKKE NGPLWLPHMD ILGVESLNYQ EYLAKSRTIG 360 QKPVDFKVVV TRDTAIVNGS CVDLVKSLLD ANRWRELFPG IVASANTTKI ISTGLSNLHD 420 GLLQLMRAEL QVMSPEVPVC DVTFLRQSVQ FGSGLWCVVD ASIDTILPGE SKTAQSIVQT 480 SSTAARRMEV RLLPSGCVIE EMENGYSKLT WMVHAAYDER AVPVLYHSLL RSAKALGACR 540 WVASLQRHSQ FLSGLHKYIF CPDSTMTEVV MRRKVLYLVK QMTSSFTGLF ASMSKATLQD 600 GDDTHFAHQI VGGATGEPAG LLLSATTTIW LPGVNPRRVY DHLRDEQCHG EWRCLLGEQL 660 HQGNALPYGA PLNGETVPEF YRMVNGLHEG HAISLISPRE MGGNISNTLL LQEARTDLSG 720 SLIVYARTDV NTVHSIMNSG LNPATVFLVS SGCAILPDCL ESFPLHPAAT ADQAGTSSAA 780 IASRSETGGS FVTVTYQMFF SSQGGAAPAS SSIHQGRDAL KKATDIFKVV LDTLTVA

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MGRPVAPRLG SPLSSPAAAH AAAGAPAPSR AARWGRGSPR PCAVLAIPLV EVMDGELKLM  60
ASYVSKLKFI LQKDQQQEPH TANLLVLLGS SNQDKRNGLS QGENRMDTCT RKKPRRYQLL  120
TMQQKETLNR AFQSCPNPDR NDLKKLAKEL NMTETQIKYW FQNCRTKMKK FKNNEERKLL  180
QKENEELKKE NAELRNRMKN STCRACDLPL FHIDCRHWEN PMLNKGNHGV TSNLIPQAVS  240
SLLPSSSGFV ASGSNLSSNA VLMPVSAMPS SVLQPAPAVS GANFPILHNL SANANDGYTE  300
KNVLLDLANR AMEEFFSLMK ENESLVKKKE NGPLWLPHMD ILGVESLNYQ EYLAKSRTIG  360
QKPVDFKVVV TRDTAIVNGS CVDLVKSLLD ANRWRELFPG IVASANTTKI ISTGLSNLHD  420
GLLQLMRAEL QVMSPEVPVC DVTFLRQSVQ FGSGLWCVVD ASIDTILPGE SKTAQSIVQT  480
SSTAARRMEV RLLPSGCVIE EMENGYSKLT WMVHAAYDER AVPVLYHSLL RSAKALGACR  540
WVASLQRHSQ FLSGLHKYIF CPDSTMTEVV MRRKVLYLVK QMTSSFTGLF ASMSKATLQD  600
GDDTHFAHQI VGGATGEPAG LLLSATTTIW LPGVNPRRVY DHLRDEQCHG EWRCLLGEQL  660
HQGNALPYGA PLNGETVPEF YRMVNGLHEG HAISLISPRE MGGNISNTLL LQEARTDLSG  720
SLIVYARTDV NTVHSIMNSG LNPATVFLVS SGCAILPDCL ESFPLHPAAT ADQAGTSSAA  780
IASRSETGGS FVTVTYQMFF SSQGGAAPAS SSIHQGRDAL KKATDIFKVV LDTLTVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	148	KKPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-91	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G10180.1