PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G10700.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 218aa MW: 23524.8 Da PI: 11.352

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G10700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.2e-05	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sFs+ L H +H OGLUM08G10700.1 160 FKCSVCGRSFSSYQALGGHKTSH 182 89**********99998888777 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MRSAMIREDR GPTCQRGHVS TPSLSLSSPS SPFLLLLSLS LSLFSASRPV AGAKAARVRR 60 ERRRRRRQVA NGETEALHAA VLKEEEQQHE VEEAAVVTSS SATSGEEGGH LPQGWAKRKR 120 SRRQRSEEEN LALCLLMLAL GGHHRVQAPP PLSAPVGAEF KCSVCGRSFS SYQALGGHKT 180 SHRFKLPTPP ASPVLAPASS EVQSPLAFLP RNSAAARI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	66	RRERRRRR
2	59	67	RRERRRRRR
3	62	67	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67450.1	9e-10	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G10700.1