PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G11390.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 567aa    MW: 64454.2 Da    PI: 9.1367
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G11390.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.4e-18221031199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + ++ +v+p +f++++  k  +s t+tle+++g+ ++v +   k+ +r++l +GW+ Fv+an ++e+Df+ F++ g+s+f   v+vf++
  OGLUM08G11390.1  22 F-KHSMVIPDRFLSHFAAK--SSGTITLETPNGNMYKVGV--GKNMKRTLLLSGWEAFVHANSIQENDFLSFRYRGSSRF--AVTVFDA 103
                      4.456********777655..5669***************..********************************998888..9999987 PP
2B342.61.1e-134425151589
                      -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       l +pk++a++h  +  es+ +tl+   ++++W  +l++++ ++ y+l++ W +Fv +n++ egD+++F+ ++  +
  OGLUM08G11390.1 442 FLEIPKEYAAAHFPN--ESVAITLQMlGKNKKWHPRLCMENDKRIYMLRGHWLDFVLDNHVVEGDICLFEPMKGGK 515
                      478*********855..6778888885577****************************************665444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    
MRKPCECCHT KMKFIWQMNG NFKHSMVIPD RFLSHFAAKS SGTITLETPN GNMYKVGVGK  60
NMKRTLLLSG WEAFVHANSI QENDFLSFRY RGSSRFAVTV FDASGLEKAR TYIDILSSSD  120
DHTTQSSASD TSDECQKVRP NHHGKQAKKP SVSSSEDLSA EDGSSGHRSL ESEDLGRFSS  180
PYYLPGHHKL AKEQKAELVA LVDKIQPEIC VLVIIMNKTN VKRHPDLVVP KDYALLHFPH  240
KNQIITLELP GKRKNWACKF RIRADGGGRH LYLGDFVHDN RILEGDLCIL QPMTKNDASV  300
FTMTVHLIRK ERTDIASSHQ TRKINSGGIS SSSHHDTTRH IHQLVCVCTN RMHVCNFIAH  360
SFHLPVETCV VCIGEGSPDE NDSFKSDDLQ TLPITDYVLS YKSYLSRAQT GQVIMLLGEI  420
RPKKPVLVAV MRKKNVQSSI PFLEIPKEYA AAHFPNESVA ITLQMLGKNK KWHPRLCMEN  480
DKRIYMLRGH WLDFVLDNHV VEGDICLFEP MKGGKFLCSQ FTSFAPRQLI TRVELVFKGL  540
AQVMEEPIQR WHQVFILRKN QLMVWKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-24B3 family protein